Selected publications

1. D Bonsall, T Golubchik, M de Cesare, M Limbada, B Kosloff, G MacIntyre-Cockett, M Hall, C Wymant, MA Ansari, L Abeler-Dorner, A Schaap, A Brown, E Barnes, E Piwowar-Manning, S Eshleman, E Wilson, L Emel, R Hayes, S Fidler, H Ayles, R Bowden, C Fraser. A comprehensive genomics solution for HIV surveillance and clinical monitoring in low income settings, J. Clin. Microbiol. 2020 Sep 22;58(10):e00382-20 PMID: 32669382
2. AG Hinch, G Zhang, PW Becker, D Moralli, R Hinch, B Davies, R Bowden, and P Donnelly. Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm. 
   Science. 2019 Mar 22;363(6433):eaau8861. PMID: 30898902 
3. J Kinchen, HH Chen, K Parikh, A Antanaviciute, M Jagielowicz, D Fawkner-Corbett, N Ashley, L Cubitt, E Mellado-Gomez, M Attar, E Sharma, Q Wills, R Bowden, FC Richter, D Ahern, KD Puri, J Henault, F Gervais, H Koohy, and A Simmons. Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease. Cell. 2018 Oct 4;175(2):372-386.e17. PMID: 30270042
4. MA Ansari, V Pedergnana, CLC Ip, A Magri, A Von Delft, D Bonsall, N Chaturvedi, I Bartha, D Smith, G Nicholson, G McVean, A Trebes, P Piazza, J Fellay, G Cooke, GR Foster, E Hudson, J McLauchlan, P Simmonds, R Bowden, P Klenerman, E Barnes, and CCA Spencer. Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus. 
   Nat Genet. 2017 May;49(5):666-673. PMID: 28394351
5. D Bonsall, M Ansari, C Ip, A Trebes, A Brown, P Klenerman, D Buck, P Piazza, E Barnes, and R Bowden. ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens. F1000Res. 2015 Oct 13;4:1062. PMID: 27092241
6. R Bowden, TS Macfie, S Myers, G Hellenthal, E Nerrienet, RE Bontrop, C Freeman, P Donnelly, and NI Mundy. Genomic tools for evolution and conservation in the chimpanzee: Pan troglodytes ellioti Is a genetically distinct population. PLoS Genet. 2012;8(3):e1002504. PMID: 22396655
7. T Golubchik, AB Brueggemann, T Street, RE Gertz, Jr., CC Spencer, T Ho, E Giannoulatou, R Link-Gelles, RM Harding, B Beall, TE Peto, MR Moore, P Donnelly, DW Crook, and R Bowden. Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event. Nat Genet. 2012 Jan 29;44(3):352-5. PMID: 22286217
8. X Didelot, R Bowden, DJ Wilson, TE Peto, and DW Crook. Transforming clinical microbiology with bacterial genome sequencing. Nat Rev Genet. 2012 Sep;13(9):601-612. PMID: 22868263
9. S Myers, R Bowden, A Tumian, RE Bontrop, C Freeman, TS MacFie, G McVean, and P Donnelly. Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination. Science. 2010 Feb 12;327(5967):876-9. PMID: 20044541
10. R Bowden, JP Simas, AJ Davis, and S Efstathiou. Murine gammaherpesvirus 68 encodes tRNA-like sequences which are expressed during latency. J Gen Virol. 1997 Jul;78 ( Pt 7):1675-87. PMID: 9225045

Further publications